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I have had the same problem on two separate ubuntu 16 computers. The solution to this problem is related to the answer given in gazebo-client-on-debian-crashes-at-startup/.

That is the culprit here is libqwt. Here are the steps I took to get it working.

  1. remove everything related to libqwt.
  2. install libqwt-qt5

After building and install gazebo I checked what libraries are linked to gazebo:

PATH_TO_GAZEBO_INSTALL/lib$ ldd * | grep libqwt => /usr/lib/ (0x00007ffac85df000) => /usr/lib/ (0x00007ff565b6b000) => /usr/lib/ (0x00007fa1c1724000)